Resonant frequency of the car is of less importance with SQ. Or at least, any peak at that point should be targeted by your EQ (if you have one).
When modelling the specs (ie: Qts, Vas, Fs; in software like WinISD), I generally aim for a flattish frequency response (the 'gain curve'). The software models the curve as if the sub/box were positioned in an anechoic chamber (equivalent to an infinitely big room); it means the subbass frequency response 'rolls off' on the graph. Whereas, once inside the confines of a car, it is boosted ('cabin gain' or 'transfer function'). This effect is not easily predictable (ie: you can't readily predict the acoustic effects of the car, or the effects of the position/direction of the sub), so if possible you would measure the stereo's frequency response on an RTA, and tune an EQ accordingly.
But, the port (ie: tuning frequency of the box) can be designed to attain a nice smooth, flat graph. Once you achieve the tuning frequency, this dictates the dimensions of the port. For SQ, you typically tune to 30~40Hz (ie: relatively low, compared with SPL box designs).
Another thing to factor in is group delay, which is also modelled in the software. High group delay (ie: >>12ms) can result in laggy sounding subbass for the frequencies affected; it is never equal across all frequencies, and tends to be worse with lower subbass, which fortunately doesn't usually feature in most recordings (ie: under 30Hz).
This screen shot is from using WinISD for the 12W7-3, comparing sealed vs ported.
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You can see the ported (green) curve extends 'lower' and is 'louder' for virutally all the subbass, compared with sealed (yellow). At 40Hz, ported is over 5dB 'louder' on the graph; possibly more by the time the sub is in the car; the effect of cabin-gain will be to naturally boost the subbass; 'how much' depends upon the car, but the effect should mean the 'sealed' curve actually extends out much flatter for the frequencies below 70Hz (ie: it won't be rolling off dramatically like the graph). In turn, it can also mean the ported box can have too much subbass!
Now, I don't know if that actually answered your question. You may already know all that stuff!